MacVector
- Macintosh software which provide sequence editing, primer design, database searching, protein analysis, alignment, phylogeny, and other functions.
- http://www.macvector.com

DNA Sequencing Software
- software to improve the quality of DNA sequencing traces collected on the ABI 3700 and 3730 DNA sequencers.
- http://www.nucleics.com/DNA_sequencing_tools/DNA_sequencing_tools.html

Argo
- Software developed by the Broad Institute for visualizing and manually annotating whole genomes. Free for research and educational users
- http://www.broad.mit.edu/annotation/argo/

JaMBW
- Java based biologist's workbench by Luca I.G.Toldo.
- http://www.bioinformatics.org/JaMBW/

Mekentosj software
- Free MacOS X programs for molecular biologists. Offers 4Peaks - a DNA sequencing trace viewer, iRNAi - RNAi design, and LabAssistant - lab timer/organizer.
- http://www.mekentosj.com/programs/

DoMix Scientific Software
- Offers software for sequence alignment, phylogenetic tree visualization, contig assembly and sequence proof reading
- http://science.do-mix.de/index.php

Blue Tractor Software
- Java based commercial software for DNA and Protein sequence analysis. Demo available.
- http://www.bluetractorsoftware.co.uk

Phenosystems
- Offers the Gensearch software to locate and analyse potential mutation locations.
- http://www.phenosystems.com

FinchTV
- Free DNA sequencing chromatogram trace viewer. Runs on Window, MacOS X, Linux & Solaris. Uses QT library.
- http://www.geospiza.com/finchtv/

EnzymeX
- Free MacOS X program for molecular biologists that can be used to determine which restriction enzymes cut a DNA sequence. Includes list of all commercially available RE.
- http://www.mekentosj.com/enzymex/

Molecular Biology Software Links
- Links to biological software for DNA sequencing, molecule modeling, polymerase chain reaction and taxonomy.
- http://www.yk.rim.or.jp/~aisoai/soft.html

Cognia
- Provides tools research analysis in genomics, signal transduction and molecular biology.
- http://www.cognia.com/

Insilico Biotechnology
- Offering predictive software tools and services for metabolic engineering and drug discovery. Based in Germany.
- http://www.insilico-biotechnology.com/

SoftZymics
- Package for statistical analysis of steady-state enzyme kinetic data, and presentation graphics, for Macintosh or Windows based computers. Previews, price and form to order from Princeton, New Jersey.
- http://www.softzymics.com/

eLABorate Packages
- Programs designed as educational exercise for planning experiments in enzyme kinetics, protein-ligand binding, protein purification and related projects from the University of York, UK.
- http://www.york.ac.uk/depts/chem/staff/elaborate/packages/

BioKin, Ltd.
- Offers script-driven programming for data analysis in viral dynamics, enzyme kinetics, receptor binding and drug discovery screening. Includes demo download, technical support and contacts for consulting in Pullman, Washington.
- http://www.biokin.com/