DNA Baser
- Commercial sequence package for contig assembly in batch mode, to investigate genomic fragments, rRNA and protein genes. Includes trial download for Microsoft platforms from Windows 95 to XP.
- http://www.dnabaser.com/

YASS
- Offers downloadable program to perform local alignment of DNA sequences.
- http://bioinfo.lifl.fr/yass/

QualTrace Sequencing Software
- Analyzes the raw data contained within ABI trace files to identify nine major problems with either the reactions or instrument.
- http://www.nucleics.com/DNA_sequencing_tools/DNA-sequencing-software-qualtrace.html

Oligodb
- A web-based system for interactive design of oligo DNA for transcription profiling (hybridization) of genes.
- http://bioinf.charite.de/oligodb/

DNA-Match
- Overview of program from that reads and processes fragment analysis files measured on ABI DNA-Sequencers. Contacts for BJ Diagnostik GmbH, Gießen, Germany.
- http://www.linkage-analysis.com/

Artemis Software
- Available from the Sanger Institute of the Wellcome Foundation, is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses.
- http://www.sanger.ac.uk/Software/Artemis/