Introduction to Macromolecular Simulation
- Notes by Peter J. Steinbach on the application of statistical mechanics to the structure and dynamics of biomolecules.
- http://cmm.info.nih.gov/intro_simulation/

Phase transitions on lattices
- Phase transitions and solitons in magnetics, site and continuum percolations with interactive Java applets and comments.
- http://ibiblio.org/e-notes/Perc/contents.htm

Statistical Mechanical Simulator
- Online applet and downloadable program to simulate equilibrium statistical mechanics.
- http://ir.chem.cmu.edu/irproject/applets/statmech/

Introduction to Statistical Thermodynamics
- Articles from the Penn State Polymer Physics Group.
- http://www.plmsc.psu.edu/~www/matsc597c-1997/introduction/index.html

Molecular Dynamics Simulator
- Java applets to simulate motion of molecules under different potentials.
- http://polymer.bu.edu/wamnet.html

Philosophy of Statistical Mechanics
- Entry in Stanford Encyclopedia of Philosophy with bibliography and links.
- http://plato.stanford.edu/entries/statphys-statmech/

Boltzmann Transport Equation
- A paper by Uri Lachish studying transport phenomena: currents and transport coefficients; thermally induced diffusion.
- http://urila.tripod.com/Boltzmann.htm

Statistical Mechanics in a Nutshell
- Lecture notes by Jochen Rau from a course on "Transport Theory" taught at Dresden University.
- http://arxiv.org/abs/physics/9805024

History of Statistical Physics
- A short review by D. Flamm of the history of statistical physics.
- http://arxiv.org/abs/physics/9803005

Center for Statistical Mechanics and Mathematical Physics
- An interdisciplinary center at Virginia Tech. Staff and research interests.
- http://www.mathphys.vt.edu/

Ilya Prigogine Center for Studies in Statistical Mechanics and Complex Systems
- University of Texas at Austin. Links to faculty and staff, e-prints, and tutorials in chaos physics and other topics.
- http://order.ph.utexas.edu/

King's College London
- Statistical Mechanics and Quantum Probability Group. Staff and preprints.
- http://www.mth.kcl.ac.uk/research/statphys/

ArXiv Statistical Mechanics
- Recent papers and preprints in Statistical Mechanics.
- http://arxiv.org/list/cond-mat.stat-mech/recent

Entropy
- Online journal intended for collegiate audiences. Provides links to web-based articles as well as some "basic" lessons on entropy.
- http://www.mdpi.org/entropy/

Monte Carlo Simulation for Statistical Physics
- A brief online text book on Monte Carlo Methods by Paul Coddington, Syracuse University.
- http://www.npac.syr.edu/users/paulc/lectures/montecarlo/p_montecarlo.html