Dark Carnival - Book store for science fiction, fantasy, and mystery. - http://www.darkcarnival.com/
Diesel Bookstore - Independent neighborhood bookstore. Recommended reading lists, store events, information on local authors, and book reviews. - http://www.dieselbookstore.com/
Moe's Books - Great used selection. Antiquarian shop on 4th floor. Offering sciences, history, and art selection. On-line catalog and free booksearch service. - http://www.moesbooks.com/
Heyday Books - Publishers of books about California history and culture, natural history, literature, poetry, regional guides, and Indian life. - http://www.heydaybooks.com
Serendipity Books - Stacks of used books, especially antiquarian. Catalogs of selected subjects; on-line searching of selected stock. Floorspace clogged with shelf overflow to a serious degree. - http://www.serendipitybooks.com/
Cody's Books - Large independent bookstore with a searchable database of over a million titles. Includes reading lists and events calendar. Local delivery by bicycle. - http://www.codysbooks.com/
Brian's Guide to Berkeley Bookstores - Everything you need to know about Berkeley bookstores, including location, hours, contacts, selection, and service - http://www.ucmp.berkeley.edu/people/brs/books/index.html